lncRNAdb: a reference database for long noncoding RNAs, Nucleic Acids Res, vol.39, 2011. ,
, GenBank. Nucleic Acids Res, vol.39, pp.32-37, 2011.
The HGNC Database in 2008: a resource for the human genome, Nucleic Acids Res, vol.36, 2008. ,
A statistical analysis of nucleotide sequences of introns and exons in human genes, Mol. Biol. Evol, vol.4, pp.395-405, 1987. ,
Online synonymous codon usage analyses with the ade4 and seqinR packages, Bioinformatics, vol.21, pp.545-547, 2005. ,
URL : https://hal.archives-ouvertes.fr/hal-00427727
Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA, Mol. Cell, vol.35, pp.467-478, 2009. ,
Long noncoding RNAs in cell biology, Semin. Cell Dev. Biol, vol.22, pp.366-376, 2011. ,
The evolution of RNAs with multiple functions, Biochimie, vol.93, pp.2013-2018, 2011. ,
Differentiating protein-coding and noncoding RNA: challenges and ambiguities, PLoS Comput. Biol, vol.4, p.1000176, 2008. ,
miRNAs in human cancer, J. Pathol, vol.223, pp.102-115, 2011. ,
, , 2001.
, Genome-scale compositional comparisons in eukaryotes, Genome Res, vol.11, pp.540-546
Small silencing RNAs: an expanding universe, Nat. Rev. Genet, vol.10, pp.94-108, 2009. ,
The microRNA Registry, Nucleic Acids Res, vol.32, 2004. ,
Rfam: an RNA family database, Nucleic Acids Res, vol.31, pp.439-441, 2003. ,
Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res, vol.33, 2005. ,
Structure of a ribonucleic acid, Science, vol.147, pp.1462-1465, 1965. ,
Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines, DNA Cell Biol, vol.25, pp.418-428, 2006. ,
URL : https://hal.archives-ouvertes.fr/hal-02127748
Steroid receptor RNA activator protein binds to and counteracts SRA RNA-mediated activation of MyoD and muscle differentiation, Nucleic Acids Res, vol.39, pp.513-525, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02127321
Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs, Nature, vol.469, pp.97-101, 2011. ,
RNA maps reveal new RNA classes and a possible function for pervasive transcription, Science, vol.316, pp.1484-1488, 2007. ,
Dark Matter RNA: existence, function, and controversy, Front. Genet, vol.3, p.60, 2012. ,
Global dinucleotide signatures and analysis of genomic heterogeneity, Curr. Opin. Microbiol, vol.1, 1998. ,
Exploration of small RNAs, PLoS Genet, vol.4, p.22, 2008. ,
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine, Nucleic Acids Res, vol.35, pp.345-349, 2007. ,
Review: the role of microRNAs in kidney disease, Nephrology.(Carlton.), vol.15, pp.599-608, 2010. ,
Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness, Genome Biol, vol.10, p.124, 2009. ,
Non-coding RNAs: the architects of eukaryotic complexity, EMBO Rep, vol.2, pp.986-991, 2001. ,
Challenging the dogma: the hidden layer of nonprotein-coding RNAs in complex organisms, Bioessays, vol.25, pp.930-939, 2003. ,
The central role of RNA in human development and cognition, FEBS Lett, vol.585, pp.1600-1616, 2011. ,
Long non-coding RNAs: insights into functions, Nat. Rev. Genet, vol.10, pp.155-159, 2009. ,
RNAdb-a comprehensive mammalian noncoding RNA database, Nucleic Acids Res, vol.33, 2005. ,
Signatures of purifying and local positive selection in human miRNAs, Am. J. Hum. Genet, vol.84, pp.316-327, 2009. ,
, , 1963.
, Biochim. Biophys. Acta, vol.68, pp.653-656
, genenames.org: the HGNC resources in 2011, vol.39, 2011.
Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Res, vol.26, pp.148-153, 1998. ,
URL : https://hal.archives-ouvertes.fr/hal-00356160
Identification of potentially new bifunctional RNA based on genome-wide data-mining of alternative splicing events, Biochimie, vol.93, pp.2024-2027, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02127774
When one is better than two: RNA with dual functions, Biochimie, vol.93, pp.633-644, 2011. ,
URL : https://hal.archives-ouvertes.fr/hal-02127323
Long noncoding RNAs: functional surprises from the RNA world, Genes Dev, vol.23, pp.1494-1504, 2009. ,
The European ribosomal RNA database, Nucleic Acids Res, vol.32, pp.101-103, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00427639
tRNA, new aspects in intracellular dynamics, Cell. Mol. Life Sci, vol.63, pp.1813-1818, 2006. ,
, Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest