T. Barrett, T. O. Suzek, D. B. Troup, S. E. Wilhite, W. C. Ngau et al., NCBI GEO: mining millions of expression profiles-database and tools, Nucleic Acids Res, vol.33, pp.562-566, 2005.

A. Bashirullah, R. L. Cooperstock, and H. D. Lipshitz, Spatial and temporal control of RNA stability, Proc. Natl. Acad. Sci. U.S.A, vol.98, pp.7025-7028, 2001.

M. M. Candeias, L. Malbert-colas, D. J. Powell, C. Daskalogianni, M. M. Maslon et al., P53 mRNA controls p53 activity by managing Mdm2 functions, Nat. Cell Biol, vol.10, pp.1098-1105, 2008.

T. Ching, S. Huang, and L. X. Garmire, Power analysis and sample size estimation for RNA-Seq differential expression, RNA, vol.20, pp.1684-1696, 2014.

S. Chooniedass-kothari, E. Emberley, M. K. Hamedani, S. Troup, X. Wang et al., The steroid receptor RNA activator is the first functional RNA encoding a protein, FEBS Lett, vol.566, pp.43-47, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02127389

S. Chooniedass-kothari, M. K. Hamedani, S. Troup, F. Hubé, and E. Leygue, The steroid receptor RNA activator protein is expressed in breast tumor tissues, Int. J. Cancer, vol.118, pp.1054-1059, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02127760

M. E. Dinger, D. K. Gascoigne, and J. S. Mattick, The evolution of RNAs with multiple functions, Biochimie, vol.93, pp.2013-2018, 2011.

M. E. Dinger, K. C. Pang, T. R. Mercer, and J. S. Mattick, Differentiating protein-coding and noncoding RNA: challenges and ambiguities, PLoS Comput. Biol, vol.4, p.1000176, 2008.

E. Emberley, G. J. Huang, M. K. Hamedani, A. Czosnek, D. Ali et al., Identification of new human coding steroid receptor RNA activator isoforms, Biochem. Biophys. Res. Commun, vol.301, pp.509-515, 2003.

C. Francastel and F. Hube, Coding or non-coding: need they be exclusive?, Biochimie, vol.93, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02127324

K. Hashimoto, E. Ishida, S. Matsumoto, N. Shibusawa, S. Okada et al., A liver X receptor (LXR)-? alternative splicing variant (LXRBSV) acts as an RNA co-activator of LXR-?, Biochem. Biophys. Res. Commun, vol.390, pp.1260-1265, 2009.

R. W. Holley, J. Apgar, G. A. Everett, J. T. Madison, M. Marquisee et al., Structure of a ribonucleic acid, Science, vol.147, pp.1462-1465, 1965.

F. Hube, J. Guo, S. Chooniedass-kothari, C. Cooper, M. K. Hamedani et al., Alternative splicing of the first intron of the steroid receptor RNA activator (SRA) participates in the generation of coding and noncoding RNA isoforms in breast cancer cell lines, DNA Cell Biol, vol.25, pp.418-428, 2006.
URL : https://hal.archives-ouvertes.fr/hal-02127748

F. Hubé, D. Ulveling, A. Sureau, S. Forveille, and C. Francastel, Short intron-derived ncRNAs, Nucleic Acids Res, vol.45, pp.4768-4781, 2017.

F. Hubé, G. Velasco, J. Rollin, D. Furling, and C. Francastel, Steroid receptor RNA activator protein binds to and counteracts SRA RNA-mediated activation of MyoD and muscle differentiation, Nucleic Acids Res, vol.39, pp.513-525, 2011.

N. T. Ingolia, L. F. Lareau, and J. S. Weissman, Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes, Cell, vol.147, pp.789-802, 2011.

M. Jain, J. R. Tyson, M. Loose, C. L. Ip, D. A. Eccles et al., MinION analysis and reference consortium: phase 2 data release and analysis of R9.0 chemistry, vol.6, p.760, 1000.

R. P. Jansen, mRNA localization: message on the move, Nat. Rev. Mol. Cell Biol, vol.2, pp.247-256, 2001.

A. Jenny, O. Hachet, P. Závorszky, A. Cyrklaff, M. D. Weston et al., A translation-independent role of oskar RNA in early Drosophila oogenesis, Development, vol.133, pp.2827-2833, 2006.

Y. Kageyama, T. Kondo, and Y. Hashimoto, Coding vs non-coding: translatability of short ORFs found in putative non-coding transcripts, Biochimie, vol.93, pp.1981-1986, 2011.

T. Kondo, S. Plaza, J. Zanet, E. Benrabah, P. Valenti et al., Small peptides switch the transcriptional activity of shavenbaby during Drosophila embryogenesis, Science, vol.329, pp.336-339, 2010.

E. G. Magny, J. I. Pueyo, F. M. Pearl, M. A. Cespedes, J. E. Niven et al., Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames, Science, vol.341, pp.1116-1120, 2013.

K. Maki, T. Morita, H. Otaka, H. Aiba, H. Nagano et al., A novel myogenic function residing in the 5' non-coding region of Insulin receptor substrate-1 (Irs-1) transcript, Mol. Microbiol, vol.76, pp.782-792, 2010.

J. W. Nam, S. W. Choi, and B. H. You, Incredible RNA: dual functions of coding and noncoding, Mol. Cells, vol.39, pp.367-374, 2016.

N. Naski, M. Gajjar, K. Bourougaa, L. Malbert-colas, R. Fahraeus et al., The p53 mRNA-Mdm2 interaction, Cell Cycle, vol.8, pp.31-34, 2009.

A. Rhoads and K. F. Au, PacBio sequencing and its applications, Gen. Proteomics Bioinformatics, vol.13, pp.278-289, 2015.

C. Rongo, E. R. Gavis, and R. Lehmann, Localization of oskar RNA regulates oskar translation and requires Oskar protein, Development, vol.121, pp.2737-2746, 1995.

A. Santos, K. Tsafou, C. Stolte, S. Pletscher-frankild, S. I. O'donoghue et al., Comprehensive comparison of large-scale tissue expression datasets, PeerJ, vol.3, 2015.

J. E. Smith and K. E. Baker, Nonsense-mediated RNA decaya switch and dial for regulating gene expression, Bioessays, vol.37, pp.612-623, 2015.

D. Ulveling, C. Francastel, and F. Hubé, Identification of potentially new bifunctional RNA based on genome-wide data-mining of alternative splicing events, Biochimie, vol.93, pp.2024-2027, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02127774

D. Ulveling, C. Francastel, and F. Hubé, When one is better than two: RNA with dual functions, Biochimie, vol.93, pp.633-644, 2011.
URL : https://hal.archives-ouvertes.fr/hal-02127323

C. K. Vanderpool, D. Balasubramanian, and C. R. Lloyd, Dual-function RNA regulators in bacteria, Biochimie, vol.93, pp.1943-1949, 2011.

A. W. Van-der-velden and A. A. Thomas, The role of the 5 ? untranslated region of an mRNA in translation regulation during development, Int. J. Biochem. Cell Biol, vol.31, pp.87-106, 1999.

C. S. Wadler and C. K. Vanderpool, A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide, Proc. Natl. Acad. Sci. U.S.A, vol.104, pp.20454-20459, 2007.

Y. Wang, S. Xue, X. Liu, H. Liu, T. Hu et al., Analyses of long non-coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium, Sci. Rep, vol.6, p.20238, 2016.

L. Williamson, M. Saponaro, S. Boeing, P. East, R. Mitter et al., UV irradiation induces a non-coding RNA that functionally opposes the protein encoded by the same gene, Cell, vol.168, pp.843-855, 2017.

Q. Xu, D. Walker, A. Bernardo, J. Brodbeck, M. E. Balestra et al., Intron-3 retention/splicing controls neuronal expression of apolipoprotein E in the CNS, J. Neurosci, vol.28, pp.1452-1459, 2008.

J. Zanet, E. Benrabah, T. Li, A. Pélissier-monier, H. Chanut-delalande et al., Pri sORF peptides induce selective proteasomemediated protein processing, Science, vol.349, pp.1356-1358, 2015.

Z. Zhang, D. Xin, P. Wang, L. Zhou, L. Hu et al., Noisy splicing, more than expression regulation, explains why some exons are subject to nonsense-mediated mRNA decay, BMC Biol, vol.7, p.23, 2009.