G-quadruplex structures: in vivo evidence and function, Trends in Cell Biology, vol.19, issue.8, pp.414-436, 2008. ,
DOI : 10.1016/j.tcb.2009.05.002
High-throughput sequencing of DNA G-quadruplex structures in the human genome, Nature Biotechnology, vol.43, issue.8, pp.877-881, 2015. ,
DOI : 10.1093/nar/gkp1137
, Nucleic Acids Res Nucleic Acids Res J. Nucleic Acids Nucleic Acids Res, vol.35, issue.44, pp.406-413, 2005.
, , 2017.
Bulges in G-Quadruplexes: Broadening the Definition of G-Quadruplex-Forming Sequences, Journal of the American Chemical Society, vol.135, issue.13, pp.5017-5028, 2013. ,
DOI : 10.1021/ja310251r
, , pp.54-62, 2017.
, Proc. Natl. Acad. Sci. 2015, pp.14581-14586
??- 1) guanines in the G-tetrad core: formation of a G-triad??water complex and implication for small-molecule binding, Nucleic Acids Research, vol.1820, issue.2, pp.910-916, 2016. ,
DOI : 10.1016/j.cell.2013.08.014
, Trends Biotechnol, vol.2017, issue.35, pp.997-1013
, Nucleic Acids Res, pp.42-65, 2014.
Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA, Nucleic Acids Research, vol.11, issue.10, pp.4807-4817, 2016. ,
DOI : 10.15252/embj.201490702
, Angew. Chem. Int. Ed
Visualizing the Quadruplex: From Fluorescent Ligands to Light-Up Probes, Top. Curr. Chem, vol.330, pp.111-177, 2012. ,
DOI : 10.1007/128_2012_346
, ChemBioChem, vol.2013, issue.14, pp.540-558
Recent Developments in G-Quadruplex Probes, Chemistry & Biology, vol.22, issue.7, pp.812-828, 2015. ,
DOI : 10.1016/j.chembiol.2015.06.016
URL : https://doi.org/10.1016/j.chembiol.2015.06.016
Molecular Engineering of Thiazole Orange Dye: Change of Fluorescent Signaling from Universal to Specific upon Binding with Nucleic Acids in Bioassay, ACS Chemical Biology, vol.11, issue.4, pp.1019-1029, 2016. ,
DOI : 10.1021/acschembio.5b00987
Development of a Universal Colorimetric Indicator for G-Quadruplex Structures by the Fusion of Thiazole Orange and Isaindigotone Skeleton, Analytical Chemistry, vol.84, issue.15, pp.6288-92, 2012. ,
DOI : 10.1021/ac300207r
, , pp.70117-70123, 2016.
, Org. Biomol. Chem, vol.2013, issue.11, pp.480-487
A Fluorescent Carbazole Derivative:??? High Sensitivity for Quadruplex DNA, Analytical Chemistry, vol.75, issue.22, pp.6177-6183, 2003. ,
DOI : 10.1021/ac034789i
, Chem. Eur. J. 2013, vol.19, pp.1214-1226
Aggregating distyrylpyridinium dye as a bimodal structural probe for G-quadruplex DNA, New Journal of Chemistry, vol.14, issue.8, pp.5931-5935, 2015. ,
DOI : 10.1101/gr.849004
, , pp.1834-1838, 2014.
, Analyst, vol.2015, issue.140, pp.7146-7149
, Bioorg. Med. Chem. Lett, vol.25, pp.5672-5676, 2015.
A Bis(methylpiperazinylstyryl)phenanthroline as a Fluorescent Ligand for G-Quadruplexes, Chemistry - A European Journal, vol.19, issue.17, pp.6037-6047, 2016. ,
DOI : 10.1002/chem.201203710
Fluorescence Light-Up Probe for Parallel G-Quadruplexes, Analytical Chemistry, vol.86, issue.1, pp.943-952, 2014. ,
DOI : 10.1021/ac403676x
Sensor, Analytical Chemistry, vol.86, issue.3, pp.1622-1631, 2014. ,
DOI : 10.1021/ac403326m
URL : https://hal.archives-ouvertes.fr/hal-00933306
Minimal Thioflavin T Modifications Improve Visual Discrimination of Guanine-Quadruplex Topologies and Alter Compound-Induced Topological Structures, Analytical Chemistry, vol.86, issue.24, pp.12078-12084, 2014. ,
DOI : 10.1021/ac5028325
, Chem. Commun, vol.50, pp.2014-12173
Synthesis and Evaluation of a Novel Class of G-Quadruplex-Stabilizing Small Molecules Based on the 1,3-Phenylene-Bis(piperazinyl benzimidazole) System, Biochemistry, vol.48, issue.45, pp.10693-10704, 2009. ,
DOI : 10.1021/bi9003815
, , pp.4616-4625, 2015.
, , pp.251-259, 2014.
A Twice-As-Smart Synthetic G-Quartet: PyroTASQ Is Both a Smart Quadruplex Ligand and a Smart Fluorescent Probe, Journal of the American Chemical Society, vol.136, issue.35, pp.12406-12414, 2014. ,
DOI : 10.1021/ja506331x
URL : https://hal.archives-ouvertes.fr/hal-02125767
, , 2016.
Red/NIR G-Quadruplex Sensing, Harvesting Blue Light by a Coumarin-Naphthalene Diimide Dyad, Chemistry - A European Journal, vol.86, issue.49, pp.17596-17600, 2015. ,
DOI : 10.1021/ac403676x
, Sens. Actuators, B, vol.2017, issue.245, pp.780-788
Preferential binding of a G-quadruplex ligand to human chromosome ends, Nucleic Acids Research, vol.33, issue.13, pp.4182-4190, 2005. ,
DOI : 10.1093/nar/gki722
, , pp.2917-2928, 2005.
Photo-Cross-Linking Probes for Trapping G-Quadruplex DNA, Angewandte Chemie International Edition, vol.10, issue.4, pp.994-998, 2014. ,
DOI : 10.1039/c2ob26504d
, , pp.16446-16465, 2015.
,
, Bioconjug. Chem, vol.27, pp.1456-1470, 2016.
Engineering Bisquinolinium/Thiazole Orange Conjugates for Fluorescent Sensing of G-Quadruplex DNA, Angewandte Chemie International Edition, vol.8, issue.12, pp.2188-2191, 2009. ,
DOI : 10.1002/anie.200805613
URL : https://hal.archives-ouvertes.fr/hal-00367311
Electron donor-acceptor quenching and photoinduced electron transfer for coumarin dyes, The Journal of Organic Chemistry, vol.49, issue.15, pp.2705-2708, 1984. ,
DOI : 10.1021/jo00189a010
Photoinduced Electron Transfer in Covalently Linked 1,8-Naphthalimide/Viologen Systems, The Journal of Physical Chemistry A, vol.104, issue.29, pp.6778-6785, 2000. ,
DOI : 10.1021/jp000855y
Novel Bifunctional Viologen-Linked Pyrene Conjugates:?? Synthesis and Study of Their Interactions with Nucleosides and DNA, The Journal of Physical Chemistry B, vol.110, issue.48, pp.24678-24686, 2006. ,
DOI : 10.1021/jp063079o
Synthetic spectroscopic models related to coenzymes and base pairs. II. Evidence for intramolecular base-base interactions in dinucleotide analogs, Journal of the American Chemical Society, vol.90, issue.26, pp.7302-7323, 1968. ,
DOI : 10.1021/ja01028a023
, Can. J. Chem, vol.62, 1984.
Heterodimeric molecules including nucleic acid bases and 9-aminoacridine. Spectroscopic studies, conformations, and interactions with DNA, Biochemistry, vol.27, issue.11, pp.3997-4003, 1988. ,
DOI : 10.1021/bi00411a016
Solvent effects on emission yield and lifetime for coumarin laser dyes. Requirements for a rotatory decay mechanism, The Journal of Physical Chemistry, vol.89, issue.2, pp.294-300, 1985. ,
DOI : 10.1021/j100248a024
Solvent Effects on the UV???vis Absorption and Emission of Optoelectronic Coumarins: a Comparison of Three Empirical Solvatochromic Models, The Journal of Physical Chemistry C, vol.117, issue.28, pp.14731-14741, 2013. ,
DOI : 10.1021/jp310397z
Solvent Effects on Electronic Transitions of Highly Dipolar Dyes:?? A Comparison of Three Approaches, The Journal of Physical Chemistry A, vol.108, issue.42, pp.9294-9301, 2004. ,
DOI : 10.1021/jp0486088
Solvatochromic Dyes as Solvent Polarity Indicators, Chemical Reviews, vol.94, issue.8, pp.2319-2358, 1994. ,
DOI : 10.1021/cr00032a005
, J. Braz. Chem. Soc, vol.25, pp.469-477, 2014.
Kinetics of Fluorescence Quenching by Electron and H-Atom Transfer, Israel Journal of Chemistry, vol.39, issue.2, pp.259-271, 1970. ,
DOI : 10.1039/df9653900183
Nucleobase-Specific Quenching of Fluorescent Dyes. 1. Nucleobase One-Electron Redox Potentials and Their Correlation with Static and Dynamic Quenching Efficiencies, The Journal of Physical Chemistry, vol.100, issue.13, pp.5541-5553, 1996. ,
DOI : 10.1021/jp951507c
-alkylbutanoamide End-Labeled Oligonucleotides, The Journal of Physical Chemistry B, vol.103, issue.43, pp.9321-9327, 1999. ,
DOI : 10.1021/jp9913822
Integrated Modeling Program, Applied Chemical Theory (IMPACT), Journal of Computational Chemistry, vol.24, issue.16, pp.1752-1780, 2005. ,
DOI : 10.1038/nrd1129
URL : http://europepmc.org/articles/pmc2742605?pdf=render
, Accepted Manuscript Chemistry -A European Journal
Interconversion of single and double helices formed from synthetic molecular strands, Nature, vol.6, issue.6805, pp.720-723, 2000. ,
DOI : 10.1002/1521-3765(20000602)6:11<1938::AID-CHEM1938>3.0.CO;2-Y
Highly Efficient G-Quadruplex Recognition by Bisquinolinium Compounds, Journal of the American Chemical Society, vol.129, issue.7, pp.1856-1857, 2007. ,
DOI : 10.1021/ja067352b
URL : https://hal.archives-ouvertes.fr/hal-02124562
, Angewandte Chemie International Edition, vol.51, issue.4, pp.999-1002, 2014.
DOI : 10.1002/anie.201206281
parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu, The Journal of Chemical Physics, vol.16, issue.15, p.154104, 2010. ,
DOI : 10.1039/b803508c
The Viologen Cation Radical Pimer: A Case of Dispersion-Driven Bonding, Angewandte Chemie International Edition, vol.127, issue.32, pp.9435-9439, 2017. ,
DOI : 10.1002/ange.201503476
Ligand-Induced Conformational Changes with Cation Ejection upon Binding to Human Telomeric DNA G-Quadruplexes, Journal of the American Chemical Society, vol.137, issue.2, pp.750-756, 2015. ,
DOI : 10.1021/ja5099403
URL : https://hal.archives-ouvertes.fr/hal-01524156
, Nucleic Acids Res, vol.43, pp.10376-10386, 2015.
, , pp.183-195, 2007.
, , pp.122-128, 2012.
, Biochimie, vol.2015, issue.115, pp.194-202
Improved curve fitting procedures to determine equilibrium binding constants, The Analyst, vol.26, issue.10, p.1145, 2006. ,
DOI : 10.1016/0076-6879(93)26012-X
Formation of H aggregates in a 7-aminocoumarin dye monolayer: A spectroscopy and elasticity study, Thin Solid Films, vol.247, issue.2, pp.226-229, 1994. ,
DOI : 10.1016/0040-6090(94)90803-6
Intriguing H-Aggregate and H-Dimer Formation of Coumarin-481 Dye in Aqueous Solution As Evidenced from Photophysical Studies, The Journal of Physical Chemistry A, vol.116, issue.18, pp.4473-4484 ,
DOI : 10.1021/jp210433f
A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro, Nucleic Acids Research, vol.6, issue.4, pp.1499-1508, 2012. ,
DOI : 10.1371/journal.pone.0024421
Standards for photoluminescence quantum yield measurements in solution (IUPAC Technical Report), Pure and Applied Chemistry, vol.31, issue.12, pp.2213-2228, 2011. ,
DOI : 101016
, A Guide to Recording Fluorescence Quantum Yields, HORIBA Jobin Yvon, 2014.
VMD: Visual molecular dynamics, Journal of Molecular Graphics, vol.14, issue.1, pp.33-38, 1996. ,
DOI : 10.1016/0263-7855(96)00018-5
, Gaussian, vol.09, 2009.
, Anal. Chem, vol.50, 1978.
, Accepted Manuscript Chemistry -A European Journal